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1.
Environ Sci Technol ; 57(38): 14373-14383, 2023 09 26.
Artigo em Inglês | MEDLINE | ID: mdl-37683087

RESUMO

Transition metal catalysts can significantly enhance the pyrolytic remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs). Significantly higher pyrene removal efficiency was observed after the pyrolytic treatment of Fe-enriched bentonite (1.8% wt ion-exchanged content) relative to natural bentonite or soil (i.e., 93% vs 48% and 4%) at the unprecedentedly low temperature of 150 °C with only 15 min treatment time. DFT calculations showed that bentonite surfaces with Fe3+ or Cu2+ adsorb pyrene stronger than surfaces with Zn2+ or Na+. Enhanced pyrene adsorption results from increased charge transfer from its aromatic π-bonds to the cation site, which destabilizes pyrene allowing for faster degradation at lower temperatures. UV-Vis and GC-MS analyses revealed pyrene decomposition products in extracts of samples treated at 150 °C, including small aromatic compounds. As the pyrolysis temperature increased above 200 °C, product distribution shifted from extractable compounds to char coating the residue particles. No extractable byproducts were detected after treatment at 400 °C, indicating that char was the final product of pyrene decomposition. Tests with human lung cells showed that extracts of samples pyrolyzed at 150 °C were toxic; thus, high removal efficiency by pyrolytic treatment does not guarantee detoxification. No cytotoxicity was observed for extracts from Fe-bentonite samples treated at 300 °C, inferring that char is an appropriate treatment end point. Overall, we demonstrate that transition metals in clay can catalyze pyrolytic reactions at relatively low temperatures to decrease the energy and contact times required to meet cleanup standards. However, mitigating residual toxicity may require higher pyrolysis temperatures.


Assuntos
Bentonita , Hidrocarbonetos Policíclicos Aromáticos , Humanos , Temperatura , Bentonita/química , Pirólise , Pirenos/química , Solo
2.
J Hazard Mater ; 437: 129295, 2022 09 05.
Artigo em Inglês | MEDLINE | ID: mdl-35717817

RESUMO

Pyrolytic treatment of crude-oil contaminated soils offers great potential for rapid remediation without destroying soil fertility with lower energy requirements than incineration. Here, we show that clays impregnated with non-toxic transition metals (iron or copper) can be used as an amendment to decrease the required pyrolytic treatment temperature and time. Amending a weathered crude-oil contaminated soil with 10 % (by weight) of bentonite modified via ion-exchange with Fe or Cu, achieved 99 % removal of residual total petroleum hydrocarbons (TPH) at a pyrolysis temperature of 370 °C with 15-min contact time. Pyrolytic treatment of amended soils at the unprecedentedly low pyrolysis temperature of 300 °C resulted in 87 % TPH removal efficiency with Cu-bentonite and a 93 % with Fe-bentonite. We postulate that the transition metals catalyzed the pyrolysis reactions at lower onset temperatures. This hypothesis is supported by thermogravimetric analysis coupled with mass spectrometry, which revealed the release of hydrogen, methyl and propyl ion fragments (markers of pyrolytic degradation products of crude oil) at lower temperatures than those observed for unamended soil. Overall, this work shows proof of concept that metal-impregnated clays can enhance rapid pyro-catalytic treatment of crude-oil contaminated soils and encourages further work to understand the detailed reaction mechanisms and inform process design.


Assuntos
Petróleo , Poluentes do Solo , Bentonita , Biodegradação Ambiental , Catálise , Argila , Hidrocarbonetos/química , Petróleo/metabolismo , Pirólise , Solo/química , Microbiologia do Solo , Poluentes do Solo/metabolismo
3.
Environ Sci Technol ; 55(17): 11987-11996, 2021 09 07.
Artigo em Inglês | MEDLINE | ID: mdl-34432440

RESUMO

We developed a novel methodology that combines thermo-analytical measurements and mathematical methods to inform the reliable pyrolytic treatment of specific soil/contaminant systems. Our approach improves upon current "black-box" design methods that may overestimate the required treatment intensity and hinder cost efficacy. We used thermogravimetry and evolved gas analysis to characterize the complex network of soil mineral transformations, contaminant desorption, and pyrolytic reactions occurring when contaminated soils are heated in an anoxic atmosphere. The kinetics of these reactions were quantified using a distributed activation energy (DAE) approach with six pseudocomponents and used in a mathematical model for continuous-flow reactors to predict the removal of hydrocarbon contaminants without other fitting parameters. This model was tested with pilot-scale data from pyrolytic treatment of soils contaminated with crude oil and found to be a good predictor of the total petroleum hydrocarbon (TPH) removal for temperatures between 370 and 470 °C and residence times from 15 to 60 min. The light hydrocarbon fraction desorbed quickly, and over 99.7% removal was achieved at 420 °C and 15 min residence time. However, 95% removal of the heavy hydrocarbon fraction, which is a good proxy for polyaromatic hydrocarbons (PAHs), required 470 °C with 15 min residence time. This model can be employed to select operating conditions (e.g., reactor size, treatment time, and temperature) to reliably achieve remediation objectives for specific hydrocarbon/soil mixtures without inflating energy requirements, which would lower operating costs and decrease the process carbon footprint on a system-specific basis.


Assuntos
Petróleo , Poluentes do Solo , Biodegradação Ambiental , Poluição Ambiental , Hidrocarbonetos , Solo , Poluentes do Solo/análise
4.
Ind Eng Chem Res ; 60(40): 14534-14546, 2021 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-35765416

RESUMO

This study evaluates the performance of continuous flow adsorbers for adsorptive desulfurization. JP-8 fuel with 2,230 ppmw of sulfur was treated in a flow-through adsorber packed with CuNa-Y zeolite pellets and operating at 180 °C and 200 psig with liquid hourly space velocities (LHSV) from 0.13 to 3.24 h-1. Our results showed that a flow-through adsorber operating at these conditions can effectively reduce the sulfur content of JP-8 to ultra-low values (1-10 ppmw) over the entire LHSV range tested, although the overall performance of the adsorber declined with increasing flow rates as expected. We also observed that the total sulfur removal exceeded the theoretical adsorption limit of our zeolite adsorbent. Detailed characterization of the treated fuel and spent adsorbent via chromatographic and surface analysis techniques revealed that desulfurization occurs in two stages. Sulfur is initially removed via adsorption (chemisorption) on the CuNa-Y zeolite, an assertion supported by simulations with a transient heterogeneous model. As the adsorbent becomes saturated, however, surface chemical reactions start taking place leading to the formation of hydrogen sulfide and polymerization products, and depositing carbon residue on the zeolite. The spent adsorbent was regenerated by treating it with air at 550 or 600 °C, which restored the adsorption capacity of the material to about 90% of its initial value.

5.
Environ Sci Technol ; 53(4): 2045-2053, 2019 02 19.
Artigo em Inglês | MEDLINE | ID: mdl-30681845

RESUMO

Pyrolytic treatment offers the potential for the rapid remediation of contaminated soils. However, soil fertility restoration can be highly variable, underscoring the need to understand how treatment conditions affect soil detoxification and the ability to support plant growth. We report here the first pilot-scale study of pyrolytic remediation of crude-oil-contaminated soil using a continuously fed rotary kiln reactor. Treatment at 420 °C with only 15 min of residence time resulted in high removal efficiencies for both total petroleum hydrocarbons (TPH) (99.9%) and polycyclic aromatic hydrocarbons (PAHs) (94.5%) and restored fertility to clean soil levels (i.e., Lactuca sativa biomass dry weight yield after 21 days increased from 3.0 ± 0.3 mg for contaminated soil to 8.8 ± 1.1 mg for treated soil, which is similar to 9.0 ± 0.7 mg for uncontaminated soil). Viability assays with a human bronchial epithelial cell line showed that pyrolytic treatment effectively achieved detoxification of contaminated soil extracts. As expected, TPH and PAH removal efficiencies increased with increasing treatment intensity (i.e., higher temperatures and longer residence times). However, higher treatment intensities decreased soil fertility, suggesting that there is an optimal system-specific intensity for fertility restoration. Overall, this study highlights trade-offs between pyrolytic treatment intensity, hydrocarbon removal efficiency, and fertility restoration while informing the design, optimization, and operation of large-scale pyrolytic systems to efficiently remediate crude-oil-contaminated soils.


Assuntos
Petróleo , Hidrocarbonetos Policíclicos Aromáticos , Poluentes do Solo , Biodegradação Ambiental , Hidrocarbonetos , Solo
6.
Environ Sci Technol ; 50(5): 2498-506, 2016 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-26284736

RESUMO

Pyrolysis of contaminated soils at 420 °C converted recalcitrant heavy hydrocarbons into "char" (a carbonaceous material similar to petroleum coke) and enhanced soil fertility. Pyrolytic treatment reduced total petroleum hydrocarbons (TPH) to below regulatory standards (typically <1% by weight) within 3 h using only 40-60% of the energy required for incineration at 600-1200 °C. Formation of polycyclic aromatic hydrocarbons (PAHs) was not observed, with post-pyrolysis levels well below applicable standards. Plant growth studies showed a higher biomass production of Arabidopsis thaliana and Lactuca sativa (Simpson black-seeded lettuce) (80-900% heavier) in pyrolyzed soils than in contaminated or incinerated soils. Elemental analysis showed that pyrolyzed soils contained more carbon than incinerated soils (1.4-3.2% versus 0.3-0.4%). The stark color differences between pyrolyzed and incinerated soils suggest that the carbonaceous material produced via pyrolysis was dispersed in the form of a layer coating the soil particles. Overall, these results suggest that soil pyrolysis could be a viable thermal treatment to quickly remediate soils impacted by weathered oil while improving soil fertility, potentially enhancing revegetation.


Assuntos
Fertilizantes , Hidrocarbonetos/química , Poluentes do Solo/química , Solo/química , Arabidopsis/crescimento & desenvolvimento , Carbono , Hidrocarbonetos/análise , Incineração , Hidrocarbonetos Policíclicos Aromáticos/análise , Hidrocarbonetos Policíclicos Aromáticos/química , Poluentes do Solo/análise , Tecnologia/métodos , Termogravimetria
7.
Environ Sci Technol ; 49(24): 14057-64, 2015 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-26523420

RESUMO

Charcoal plays a significant role in the long-term carbon cycle, and its use as a soil amendment is promoted as a C sequestration strategy (biochar). One challenge in this research area is understanding the heterogeneity of charcoal properties. Although the maximum reaction temperature is often used as a gauge of pyrolysis conditions, pyrolysis duration also changes charcoal physicochemical qualities. Here, we introduce a formal definition of charring intensity (CI) to more accurately characterize pyrolysis, and we document variation in charcoal chemical properties with variation in CI. We find two types of responses to CI: either linear or threshold relationships. Mass yield decreases linearly with CI, while a threshold exists across which % C, % N, and δ(15)N exhibit large changes. This CI threshold co-occurs with an increase in charcoal aromaticity. C isotopes do not change from original biomass values, supporting the use of charcoal δ(13)C signatures to infer paleoecological conditions. Fractionation of N isotopes indicates that fire may be enriching soils in (15)N through pyrolytic N isotope fractionation. This influx of "black N" could have a significant impact on soil N isotopes, which we show theoretically using a simple mass-balance model.


Assuntos
Biomassa , Carvão Vegetal/química , Isótopos de Carbono , Isótopos de Nitrogênio , Plantas/química , Solo/química , Espectroscopia de Infravermelho com Transformada de Fourier , Temperatura
8.
Environ Sci Technol ; 47(20): 11496-503, 2013 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-24066613

RESUMO

Charcoal has a long soil residence time, which has resulted in its production and use as a carbon sequestration technique (biochar). A range of biological effects can be triggered by soil biochar that can positively and negatively influence carbon storage, such as changing the decomposition rate of organic matter and altering plant biomass production. Sorption of cellular signals has been hypothesized to underlie some of these effects, but it remains unknown whether the binding of biochemical signals occurs, and if so, on time scales relevant to microbial growth and communication. We examined biochar sorption of N-3-oxo-dodecanoyl-L-homoserine lactone, an acyl-homoserine lactone (AHL) intercellular signaling molecule used by many gram-negative soil microbes to regulate gene expression. We show that wood biochars disrupt communication within a growing multicellular system that is made up of sender cells that synthesize AHL and receiver cells that express green fluorescent protein in response to an AHL signal. However, biochar inhibition of AHL-mediated cell-cell communication varied, with the biochar prepared at 700 °C (surface area of 301 m(2)/g) inhibiting cellular communication 10-fold more than an equivalent mass of biochar prepared at 300 °C (surface area of 3 m(2)/g). These findings provide the first direct evidence that biochars elicit a range of effects on gene expression dependent on intercellular signaling, implicating the method of biochar preparation as a parameter that could be tuned to regulate microbial-dependent soil processes, like nitrogen fixation and pest attack of root crops.


Assuntos
Bactérias/metabolismo , Carvão Vegetal/metabolismo , Transdução de Sinais , Acil-Butirolactonas/isolamento & purificação , Adsorção , Genes Reporter , Proteínas de Fluorescência Verde/metabolismo , Temperatura
9.
J Biotechnol ; 158(3): 80-90, 2012 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-21930163

RESUMO

The dynamics of isogenic cell populations can be described by cell population balance models that account for phenotypic heterogeneity. To utilize the predictive power of these models, however, we must know the rates of single-cell reaction and division and the bivariate partition probability density function. These three intrinsic physiological state (IPS) functions can be obtained by solving an inverse problem that requires knowledge of the phenotypic distributions for the overall cell population, the dividing cell subpopulation and the newborn cell subpopulation. We present here a robust computational procedure that can accurately estimate the IPS functions for heterogeneous cell populations. A detailed parametric analysis shows how the accuracy of the inverse solution is affected by discretization parameters, the type of non-parametric estimators used, the qualitative characteristics of phenotypic distributions and the unknown partitioning probability density function. The effect of finite sampling and measurement errors on the accuracy of the recovered IPS functions is also assessed. Finally, we apply the procedure to estimate the IPS functions of an E. coli population carrying an IPTG-inducible genetic toggle network. This study completes the development of an integrated experimental and computational framework that can become a powerful tool for quantifying single-cell behavior using measurements from heterogeneous cell populations.


Assuntos
Divisão Celular/fisiologia , Simulação por Computador , Escherichia coli/fisiologia , Modelos Biológicos , Escherichia coli/citologia
10.
Biotechnol Bioeng ; 109(1): 187-98, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21858785

RESUMO

Availability, low price, and high degree of reduction have made glycerol a highly attractive and exploited carbon source for the production of fuels and reduced chemicals. Here we report the quantitative analysis of the fermentative metabolism of glycerol in Escherichia coli through the use of kinetic modeling and metabolic control analysis (MCA) to gain a better understanding of glycerol fermentation and identify key targets for genetic manipulation that could enhance product synthesis. The kinetics of glycerol fermentation in a batch culture was simulated using a dynamic model consisting of mass balances for glycerol, ethanol, biomass, and 11 intracellular metabolites, along with the corresponding kinetic expressions for the metabolism of each species. The model was then used to calculate metabolic control coefficients and elucidate the control structure of the pathways involved in glycerol utilization and ethanol synthesis. The calculated flux control coefficients indicate that the glycolytic flux during glycerol fermentation is almost exclusively controlled by the enzymes glycerol dehydrogenase (encoded by gldA) and dihydroxyacetone kinase (DHAK) (encoded by dhaKLM). In agreement with the MCA findings, overexpression of gldA and dhaKLM led to significant increase in glycerol utilization and ethanol synthesis fluxes. Moreover, overexpression of other enzymes involved in the pathways that mediate glycerol utilization and its conversion to ethanol had no significant impact on glycerol utilization and ethanol synthesis, further validating the MCA predictions. These findings were then applied as a means of increasing the production of ethanol: overexpression of glycerol dehyrdogenase and DHAK enabled the production of 20 g/L ethanol from crude glycerol, a by-product of biodiesel production, indicating the potential for industrial scale conversion of waste glycerol to ethanol under anaerobic conditions.


Assuntos
Escherichia coli/metabolismo , Etanol/metabolismo , Fermentação , Glicerol/metabolismo , Engenharia Metabólica , Biomassa , Reatores Biológicos , Expressão Gênica , Cinética , Redes e Vias Metabólicas/genética
11.
BMC Bioinformatics ; 12: 301, 2011 Jul 26.
Artigo em Inglês | MEDLINE | ID: mdl-21791088

RESUMO

BACKGROUND: The lac operon genetic switch is considered as a paradigm of genetic regulation. This system has a positive feedback loop due to the LacY permease boosting its own production by the facilitated transport of inducer into the cell and the subsequent de-repression of the lac operon genes. Previously, we have investigated the effect of stochasticity in an artificial lac operon network at the single cell level by comparing corresponding deterministic and stochastic kinetic models. RESULTS: This work focuses on the dynamics of cell populations by incorporating the above kinetic scheme into two Monte Carlo (MC) simulation frameworks. The first MC framework assumes stochastic reaction occurrence, accounts for stochastic DNA duplication, division and partitioning and tracks all daughter cells to obtain the statistics of the entire cell population. In order to better understand how stochastic effects shape cell population distributions, we develop a second framework that assumes deterministic reaction dynamics. By comparing the predictions of the two frameworks, we conclude that stochasticity can create or destroy bimodality, and may enhance phenotypic heterogeneity. CONCLUSIONS: Our results show how various sources of stochasticity act in synergy with the positive feedback architecture, thereby shaping the behavior at the cell population level. Further, the insights obtained from the present study allow us to construct simpler and less computationally intensive models that can closely approximate the dynamics of heterogeneous cell populations.


Assuntos
Escherichia coli/genética , Redes Reguladoras de Genes , Óperon Lac , Método de Monte Carlo , Processos Estocásticos , Simulação por Computador , Retroalimentação , Regulação da Expressão Gênica , Humanos
12.
J Theor Biol ; 266(1): 41-61, 2010 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-20685607

RESUMO

Several approaches have been used in the past to model heterogeneity in bacterial cell populations, with each approach focusing on different source(s) of heterogeneity. However, a holistic approach that integrates all the major sources into a comprehensive framework applicable to cell populations is still lacking. In this work we present the mathematical formulation of a cell population master equation (CPME) that describes cell population dynamics and takes into account the major sources of heterogeneity, namely stochasticity in reaction, DNA-duplication, and division, as well as the random partitioning of species contents into the two daughter cells. The formulation also takes into account cell growth and respects the discrete nature of the molecular contents and cell numbers. We further develop a Monte Carlo algorithm for the simulation of the stochastic processes considered here. To benchmark our new framework, we first use it to quantify the effect of each source of heterogeneity on the intrinsic and the extrinsic phenotypic variability for the well-known two-promoter system used experimentally by Elowitz et al. (2002). We finally apply our framework to a more complicated system and demonstrate how the interplay between noisy gene expression and growth inhibition due to protein accumulation at the single cell level can result in complex behavior at the cell population level. The generality of our framework makes it suitable for studying a vast array of artificial and natural genetic networks. Using our Monte Carlo algorithm, cell population distributions can be predicted for the genetic architecture of interest, thereby quantifying the effect of stochasticity in intracellular reactions or the variability in the rate of physiological processes such as growth and division. Such in silico experiments can give insight into the behavior of cell populations and reveal the major sources contributing to cell population heterogeneity.


Assuntos
Bactérias/citologia , Bactérias/crescimento & desenvolvimento , Modelos Biológicos , Algoritmos , Bactérias/metabolismo , Fenômenos Fisiológicos Bacterianos , Contagem de Células , Divisão Celular/fisiologia , Crescimento Celular , Simulação por Computador , Replicação do DNA/fisiologia , Redes Reguladoras de Genes/fisiologia , Metabolismo/fisiologia , Método de Monte Carlo , Processos Estocásticos
13.
Biophys J ; 97(2): 401-14, 2009 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-19619455

RESUMO

To provide theoretical guidance for the design and in vitro cultivation of bioartificial tissues, we have developed a multiscale computational model that can describe the complex interplay between cell population and mass transport dynamics that governs the growth of tissues in three-dimensional scaffolds. The model has three components: a transient partial differential equation for the simultaneous diffusion and consumption of a limiting nutrient; a cellular automaton describing cell migration, proliferation, and collision; and equations that quantify how the varying nutrient concentration modulates cell division and migration. The hybrid discrete-continuous model was parallelized and solved on a distributed-memory multicomputer to study how transport limitations affect tissue regeneration rates under conditions encountered in typical bioreactors. Simulation results show that the severity of transport limitations can be estimated by the magnitude of two dimensionless groups: the Thiele modulus and the Biot number. Key parameters including the initial seeding mode, cell migration speed, and the hydrodynamic conditions in the bioreactor are shown to affect not only the overall rate, but also the pattern of tissue growth. This study lays the groundwork for more comprehensive models that can handle mixed cell cultures, multiple nutrients and growth factors, and other cellular processes, such as cell death.


Assuntos
Células/citologia , Células/metabolismo , Imageamento Tridimensional , Modelos Biológicos , Algoritmos , Animais , Transporte Biológico , Bovinos , Movimento Celular , Proliferação de Células , Simulação por Computador , Dispositivos de Armazenamento em Computador , Difusão , Humanos , Coelhos , Engenharia Tecidual
14.
Biotechnol Bioeng ; 103(1): 148-61, 2009 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-19189409

RESUMO

Given its availability, low prices, and high degree of reduction, glycerol has become an ideal feedstock for the production of reduced compounds. The anaerobic fermentation of glycerol by Escherichia coli could be an excellent platform for this purpose but it requires expensive nutrients such as tryptone and yeast extract. In this work, microaerobic conditions were used as a means of eliminating the need for rich nutrients. Availability of low amounts of oxygen enabled redox balance while preserving the ability to synthesize reduced products. A fermentation balance analysis showed approximately 95% recovery of carbon and reducing equivalents. The pathways involved in glycerol dissimilation were identified using different genetic and biochemical approaches. Respiratory (GlpK-GlpD/GlpABC) and fermentative (GldA-DhaKLM) routes mediated the conversion of glycerol to glycolytic intermediates. Although pyruvate formate-lyase (PFL) and pyruvate dehydrogenase contributed to the synthesis of acetyl-CoA from pyruvate, most of the carbon flux proceeded through PFL. The pathways mediating the synthesis of acetate and ethanol were required for the efficient utilization of glycerol. The microaerobic metabolism of glycerol was harnessed by engineering strains for the co-production of ethanol and hydrogen (EH05 [pZSKLMgldA]), and ethanol and formate (EF06 [pZSKLMgldA]). High ethanol yields were achieved by genetic manipulations that reduced the synthesis of by-products succinate, acetate, and lactate. Co-production of hydrogen required the use of acidic pH while formate co-production was facilitated by inactivation of the enzyme formate-hydrogen lyase. High rates of product synthesis were realized by overexpressing glycerol dehydrogenase (GldA) and dihydroxyacetone kinase (DhaKLM). Engineered strains efficiently produced ethanol and hydrogen and ethanol and formate from glycerol in a minimal medium without rich supplements.


Assuntos
Escherichia coli/metabolismo , Glicerol/metabolismo , Ácido Acético/metabolismo , Aerobiose , Enzimas/genética , Proteínas de Escherichia coli/genética , Etanol/metabolismo , Formiatos/metabolismo , Engenharia Genética , Hidrogênio/metabolismo , Ácido Láctico/metabolismo , Redes e Vias Metabólicas , Oxirredução , Ácido Succínico/metabolismo
15.
Biotechnol Bioeng ; 102(2): 598-615, 2009 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-18853409

RESUMO

Cell population balance (CPB) models can account for the phenotypic heterogeneity that characterizes isogenic cell populations. To utilize the predictive power of these models, however, we must determine the single-cell reaction and division rates as well as the partition probability density function of the cell population. These functions can be obtained through the Collins-Richmond inverse CPB modeling methodology, if we know the phenotypic distributions of (a) the overall cell population, (b) the dividing cell subpopulation, and (c) the newborn cell subpopulation. This study presents the development of a novel assay that combines fluorescence microscopy and image processing to determine these distributions. The method is generally applicable to rod-shaped cells dividing through the formation of a characteristic constriction. Morphological criteria were developed for the automatic identification of dividing cells and validated through direct comparison with manually obtained measurements. The newborn cell subpopulation was obtained from the corresponding dividing cell subpopulation by collecting information from the two compartments separated by the constriction. The method was applied to E. coli cells carrying the genetic toggle network with a green fluorescent marker. Our measurements for the overall cell population were in excellent agreement with the distributions obtained via flow cytometry. The new assay constitutes a powerful tool that can be used in conjunction with inverse CPB modeling to rigorously quantify single-cell behavior from data collected from highly heterogeneous cell populations.


Assuntos
Bacilos Gram-Negativos Anaeróbios Facultativos/citologia , Bacilos Gram-Positivos/citologia , Processamento de Imagem Assistida por Computador/métodos , Microscopia de Fluorescência/métodos , Escherichia coli/citologia , Citometria de Fluxo , Proteínas de Fluorescência Verde/análise , Proteínas de Fluorescência Verde/biossíntese , Fenótipo
16.
Biophys J ; 90(3): 713-24, 2006 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-16299082

RESUMO

The development and testing of a discrete model describing the dynamic process of tissue growth in three-dimensional scaffolds is presented. The model considers populations of cells that execute persistent random walks on the computational grid, collide, and proliferate until they reach confluence. To isolate the effect of population dynamics on tissue growth, the model assumes that nutrient and growth factor concentrations remain constant in space and time. Simulations start either by distributing the seed cells uniformly and randomly throughout the scaffold, or from an initial condition designed to simulate the migration and cell proliferation phase of wound healing. Simulations with uniform seeding show that cell migration enhances tissue growth by counterbalancing the adverse effects of contact inhibition. This beneficial effect, however, diminishes and disappears completely for large migration speeds. By contrast, simulations with the "wound" seeding mode show a continual enhancement of tissue regeneration rates with increasing cell migration speeds. We conclude that cell locomotory parameters and the spatial distribution of seed cells can have profound effects on the dynamics of the process and, consequently, on the pattern and rates of tissue growth. These results can guide the design of experiments for testing the effectiveness of biomimetic modifications for stimulating tissue growth.


Assuntos
Biofísica/métodos , Algoritmos , Animais , Anisotropia , Ciclo Celular , Divisão Celular , Movimento Celular , Proliferação de Células , Simulação por Computador , Imageamento Tridimensional , Modelos Biológicos , Modelos Estatísticos , Software , Fatores de Tempo , Engenharia Tecidual/métodos , Cicatrização
17.
Biomaterials ; 26(17): 3645-54, 2005 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15621255

RESUMO

In this study, we investigated the effect of signaling peptides incorporated into oligo(poly(ethylene glycol) fumarate) (OPF) hydrogels on in vitro differentiation and mineralization of marrow stromal cells (MSCs) cultured in media without soluble osteogenic supplements (dexamethasone and beta-glycerol phosphate). When MSCs were cultured for 16 days on OPF hydrogels modified with Arg-Gly-Asp (RGD) containing peptides, the normalized cell number was dependent on the peptide concentration between days 0 and 5 and reached comparable values at day 10 regardless of the concentration. The alkaline phosphatase (ALP) activity of MSCs on the peptide-modified OPF hydrogels was also concentration-dependent: ALP activity showed peaks on day 10 or day 13 on OPF hydrogels modified with 2.0 and 1.0 micromol peptide/g, which were significantly greater than those on the OPF hydrogels modified with 0.1 micromol peptides/g or no peptide. A characteristic marker of osteoblastic differentiation, osteopontin (OPN), was detected for all the test groups. However, OPN secretion between days 0 and 10 was significantly higher on the peptide modified hydrogels compared to that on tissue culture-treated polystyrene. Taken together, the results indicate that the presence of signaling peptide allows for a favorable microenvironment for MSCs to differentiate into osteoblasts and produce mineralized matrix, although the soluble factors may further enhance calcium deposition. These findings further support the usefulness of OPF hydrogels as scaffolds for guided bone regeneration, and represent an initial step in exploring the complex relationship between soluble and insoluble factors in osteogenic differentiation on biodegradable materials.


Assuntos
Células da Medula Óssea/citologia , Células da Medula Óssea/efeitos dos fármacos , Oligopeptídeos/administração & dosagem , Osteoblastos/citologia , Osteoblastos/efeitos dos fármacos , Osteogênese/efeitos dos fármacos , Engenharia Tecidual/métodos , Implantes Absorvíveis , Adsorção , Animais , Células da Medula Óssea/fisiologia , Calcificação Fisiológica/efeitos dos fármacos , Calcificação Fisiológica/fisiologia , Diferenciação Celular/efeitos dos fármacos , Diferenciação Celular/fisiologia , Células Cultivadas , Materiais Revestidos Biocompatíveis/administração & dosagem , Materiais Revestidos Biocompatíveis/química , Dexametasona/administração & dosagem , Glicerofosfatos/administração & dosagem , Hidrogéis/química , Masculino , Teste de Materiais , Osteoblastos/fisiologia , Osteogênese/fisiologia , Ligação Proteica , Ratos , Ratos Wistar , Células Estromais/citologia , Células Estromais/efeitos dos fármacos , Células Estromais/fisiologia
18.
J Biomed Mater Res A ; 69(3): 535-43, 2004 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-15127400

RESUMO

We synthesized biomimetic hydrogels modified with an osteopontin-derived peptide (ODP) and used them as a substrate for in vitro culture of marrow stromal cells (MSCs) to investigate the effect of the biomimetic surface on differentiation of MSCs into osteoblasts. Proliferation and biological assays for 16 days proved that MSCs became differentiated into osteoblasts secreting osteogenic phenotypic markers such as alkaline phosphatase (ALP), osteopontin, and mineralized calcium. In addition, there was an additive effect of the cell-binding peptide on differentiation and mineralization of MSCs cultured in the presence of soluble osteogenic supplements in cell culture media. For example, calcium content at day 16 on peptide-modified hydrogels was significantly higher than on tissue culture polystyrene. Two general trends were observed: (1) proliferation of MSCs decreased as the amount of differentiation markers increased, and (2) higher peptide concentrations accelerated the differentiation of MSCs. On the hydrogel modified with ODP, ALP activity exhibited a maximum value of 36.7 +/- 4.2 pmol/cell/h at day 10 for the concentration of 2 micromol/g while the culture time needed for maximum ALP activity occurred on day 13 for the lower concentrations. On the same hydrogel, the calcium content at day 10 was 21.4 +/- 2.3 ng/cell for the peptide concentration of 2 micromol/g and 1.0 +/- 0.3 ng/cell for 1.0 micromol/g. We used Gly-Arg-Gly-Asp-Ser (GRGDS) for modification of the hydrogel as a comparison to the results with ODP. However, osteoblast development was not significantly affected by the nature of the binding peptide sequences. These results suggest that MSC function can be modulated by variation of the peptide concentration in biomimetic hydrogels used for scaffold-based bone tissue engineering.


Assuntos
Materiais Biomiméticos/metabolismo , Células da Medula Óssea/fisiologia , Calcificação Fisiológica/fisiologia , Diferenciação Celular/fisiologia , Hidrogéis/metabolismo , Osteoblastos/fisiologia , Peptídeos/metabolismo , Células Estromais/fisiologia , Fosfatase Alcalina/metabolismo , Animais , Materiais Biomiméticos/química , Células da Medula Óssea/citologia , Cálcio/metabolismo , Técnicas de Cultura de Células/métodos , Células Cultivadas , Hidrogéis/química , Masculino , Teste de Materiais , Osteoblastos/citologia , Osteopontina , Peptídeos/química , Peptídeos/genética , Polímeros/química , Polímeros/metabolismo , Ratos , Ratos Wistar , Sialoglicoproteínas/química , Sialoglicoproteínas/metabolismo , Células Estromais/citologia
19.
Biomaterials ; 25(5): 895-906, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-14609678

RESUMO

We prepared oligo(poly(ethylene glycol) fumarate) (OPF) hydrogels modified with a rat osteopontin-derived peptide (ODP), Asp-Val-Asp-Val-Pro-Asp-Gly-Arg-Gly-Asp-Ser-Leu-Ala-Try-Gly (DVDVPDGRGDSLAYG), as well as Gly-Arg-Gly-Asp-Ser (GRGDS) and investigated the modulation of marrow stromal osteoblast function on the peptide-modified hydrogels. Osteoblast attachment was competitively inhibited by a soluble peptide suggesting that the interaction of osteoblasts with the hydrogel was ligand specific. The proliferation index of osteoblasts relative to the initial seeding density was similar on the hydrogels modified with ODP (1.18+/-0.13) and GRGDS (1.27+/-0.12). However, fibroblasts proliferated faster on GRGDS-modified hydrogels than on ODP-modified hydrogels as evidenced by the proliferation indices of 4.89+/-0.03 and 2.42+/-0.16, respectively. A megacolony migration assay conducted for 3 days with a seeding density of 53,000 cells/cm(2) showed that osteoblasts migrated to a longer distance on ODP-modified hydrogels (0.23+/-0.06 mm/day) than on hydrogels modified with GRGDS (0.15+/-0.02 mm/day). In addition, osteoblasts migrated faster than fibroblasts seeded at the same density on ODP-modified hydrogels (0.15+/-0.11 mm/day). The migration of osteoblasts on the peptide-modified hydrogels was dependent on the peptide concentration of the hydrogels resulting in an increased migration distance with increasing the peptide concentration for the concentrations tested. These results show that OPF-based biomimetic hydrogels hold promise for modulating cell proliferation and migration for specific applications by altering the specific ligand and its concentration in the hydrogels.


Assuntos
Materiais Biomiméticos/química , Células da Medula Óssea/fisiologia , Movimento Celular/fisiologia , Fibroblastos/fisiologia , Hidrogéis/química , Teste de Materiais , Osteoblastos/fisiologia , Sialoglicoproteínas/química , Animais , Células da Medula Óssea/citologia , Adesão Celular/fisiologia , Técnicas de Cultura de Células/instrumentação , Técnicas de Cultura de Células/métodos , Divisão Celular/fisiologia , Linhagem Celular , Células Cultivadas , Matriz Extracelular/fisiologia , Matriz Extracelular/ultraestrutura , Fibroblastos/citologia , Regeneração Tecidual Guiada/métodos , Masculino , Osteoblastos/citologia , Osteopontina , Peptídeos/química , Ratos , Ratos Wistar , Células Estromais/citologia , Células Estromais/fisiologia , Engenharia Tecidual/métodos
20.
J Biomed Mater Res A ; 65(2): 260-70, 2003 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-12734821

RESUMO

Marrow-derived osteoblasts were cultured on poly(propylene fumarate-co-ethylene glycol) (P(PF-co-EG)) based hydrogels modified in bulk with a covalently linked RGDS model peptide. A poly(ethylene glycol) spacer arm was utilized to covalently link the peptide to the hydrogel. Three P(PF-co-EG) block copolymers were synthesized with varying poly(ethylene glycol) block lengths relative to poly(ethylene glycol) spacer arm. A poly(ethylene glycol) block length of nominal molecular weight 2000 and spacer arm of nominal molecular weight 3400 were found to reduce nonspecific cell adhesion and show RGDS concentration dependent marrow-derived osteoblast adhesion. A concentration of 100 nmol/mL RGDS was sufficient to promote adhesion of 84 +/- 17% of the initial seeded marrow-derived osteoblasts compared with 9 +/- 1% for the unmodified hydrogel after 12 h. Cell spreading was quantified as a method for evaluating adhesivity of cells to the hydrogel. A megacolony migration assay was utilized to assess the migration characteristics of the marrow-derived osteoblasts on RGDS modified hydrogels. Marrow-stromal osteoblasts migration was greater on hydrogels modified with 100 nmol/mL linked RGDS when compared with hydrogels modified with 1000 nmol/mL linked RGDS, while proliferation was not affected. These P(PF-co-EG) hydrogels modified in the bulk with RGDS peptide are potential candidates as in situ forming scaffolds for bone tissue engineering applications.


Assuntos
Materiais Biocompatíveis , Células da Medula Óssea/fisiologia , Adesão Celular/fisiologia , Quimiotaxia/fisiologia , Oligopeptídeos/farmacologia , Osteoblastos/fisiologia , Polietilenoglicóis , Polipropilenos , Animais , Células da Medula Óssea/citologia , Células da Medula Óssea/efeitos dos fármacos , Adesão Celular/efeitos dos fármacos , Tamanho Celular/efeitos dos fármacos , Tamanho Celular/fisiologia , Quimiotaxia/efeitos dos fármacos , Reagentes de Ligações Cruzadas , Relação Dose-Resposta a Droga , Hidrogéis , Masculino , Peso Molecular , Osteoblastos/citologia , Osteoblastos/efeitos dos fármacos , Inibidores da Agregação Plaquetária/farmacologia , Polietilenoglicóis/química , Polipropilenos/química , Ratos , Ratos Wistar , Relação Estrutura-Atividade
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